Serialized Form


Package ini.trakem2.display

Class ini.trakem2.display.Channel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

c

javax.swing.JCheckBox c

display

Display display

channel

int channel

alpha

float alpha

Class ini.trakem2.display.DisplayablePanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

c

javax.swing.JCheckBox c

c_locked

javax.swing.JCheckBox c_locked

c_linked

javax.swing.JCheckBox c_linked

title

javax.swing.JLabel title

title2

javax.swing.JLabel title2

idlabel

javax.swing.JLabel idlabel

titles

javax.swing.JPanel titles

sp

SnapshotPanel sp

display

Display display

d

Displayable d

listener

ini.trakem2.display.DisplayablePanel.ML listener

Class ini.trakem2.display.DisplayCanvas extends ij.gui.ImageCanvas implements Serializable

serialVersionUID: 1L

Serialized Fields

display

Display display

update_graphics

boolean update_graphics

offscreen

java.awt.image.BufferedImage offscreen

to_flush

java.util.HashSet<E> to_flush

al_top

java.util.ArrayList<E> al_top

lock_paint

Lock lock_paint

box

java.awt.Rectangle box

fake_win

FakeImageWindow fake_win

freehandProfile

FreeHandProfile freehandProfile

r

java.awt.Robot r

offscreen_lock

java.lang.Object offscreen_lock

noCursor

java.awt.Cursor noCursor

snapping

boolean snapping

dragging

boolean dragging

input_disabled

boolean input_disabled

input_disabled2

boolean input_disabled2

volatileImage

java.awt.image.VolatileImage volatileImage

volatile_lock

java.lang.Object volatile_lock

invalid_volatile

boolean invalid_volatile

RT

AbstractRepaintThread RT
Handles repaint event requests and the generation of offscreen threads.


stroke

java.awt.BasicStroke stroke
Paint lines always with a thickness of 1 pixel. This stroke is modified when the magnification is changed, to compensate.


atc

java.awt.geom.AffineTransform atc
The affine transform representing the srcRect displacement and the magnification.


x_p

int x_p
As offscreen.


y_p

int y_p
As offscreen.


x_d

int x_d
As offscreen.


y_d

int y_d
As offscreen.


x_d_old

int x_d_old
As offscreen.


y_d_old

int y_d_old
As offscreen.


popup

boolean popup

locked

boolean locked

tmp_tool

int tmp_tool

last_popup

java.awt.Point last_popup
In world coordinates.


mouse_in

boolean mouse_in

old_brush_box

java.awt.Rectangle old_brush_box

mouse_moved

ini.trakem2.display.DisplayCanvas.MouseMovedThread mouse_moved

last_keyCode

int last_keyCode

tagging

boolean tagging

animator

java.util.concurrent.ScheduledExecutorService animator

zoom_and_pan

boolean zoom_and_pan

sfs

java.util.Vector<E> sfs

Class ini.trakem2.display.DisplayNavigator extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

display

Display display

layer

Layer layer

hs_painted

java.util.Set<E> hs_painted

image

java.awt.image.BufferedImage image

redraw_displayables

boolean redraw_displayables

scale

double scale

srcRect

java.awt.Rectangle srcRect

x_p

int x_p

y_p

int y_p

new_x_old

int new_x_old

new_y_old

int new_y_old

offscreen_lock

java.lang.Object offscreen_lock

to_flush

java.util.HashSet<E> to_flush

volatileImage

java.awt.image.VolatileImage volatileImage

volatile_lock

java.lang.Object volatile_lock

invalid_volatile

boolean invalid_volatile

snapshots_mode

int snapshots_mode

RT

AbstractRepaintThread RT
Handles repaint event requests and the generation of offscreen threads.


drag

boolean drag

Class ini.trakem2.display.FakeImageWindow extends ij.gui.ImageWindow implements Serializable

serialVersionUID: 1L

Serialized Fields

display

Display display

Class ini.trakem2.display.LayerPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

title

javax.swing.JLabel title

slider

javax.swing.JSlider slider

color

java.awt.Color color

alpha

float alpha

display

Display display

layer

Layer layer

Class ini.trakem2.display.SnapshotPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

display

Display display

d

Displayable d

img

java.awt.image.BufferedImage img

Class ini.trakem2.display.YesNoDialog extends java.awt.Dialog implements Serializable

serialVersionUID: 1L

Serialized Fields

yesB

java.awt.Button yesB

noB

java.awt.Button noB

yesPressed

boolean yesPressed

firstPaint

boolean firstPaint

closing_task

java.lang.Runnable closing_task

Package ini.trakem2.imaging

Class ini.trakem2.imaging.ContrastPlot extends java.awt.Canvas implements Serializable

serialVersionUID: 1L

Serialized Fields

defaultMin

double defaultMin

defaultMax

double defaultMax

min

double min

max

double max

histogram

int[] histogram

hmax

int hmax

os

java.awt.Image os

color

java.awt.Color color

Package ini.trakem2.persistence

Class ini.trakem2.persistence.Loader$3$1 extends java.lang.Object implements Serializable


Package ini.trakem2.tree

Class ini.trakem2.tree.DNDTree extends javax.swing.JTree implements Serializable

Serialized Fields

autoscrollInsets

java.awt.Insets autoscrollInsets

dtth

DefaultTreeTransferHandler dtth

dispatcher

Dispatcher dispatcher

project

Project project

background

java.awt.Color background

Class ini.trakem2.tree.DNDTree.NodeRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable

Class ini.trakem2.tree.LayerTree extends DNDTree implements Serializable

serialVersionUID: 1L

Serialized Fields

selected_node

javax.swing.tree.DefaultMutableTreeNode selected_node

Class ini.trakem2.tree.LayerTree.LayerThingNodeRender extends DNDTree.NodeRenderer implements Serializable

serialVersionUID: 1L

Class ini.trakem2.tree.ProjectTree extends DNDTree implements Serializable

Serialized Fields

selected_node

javax.swing.tree.DefaultMutableTreeNode selected_node

Class ini.trakem2.tree.ProjectTree.ProjectThingNodeRenderer extends DNDTree.NodeRenderer implements Serializable

Class ini.trakem2.tree.TemplateTree extends DNDTree implements Serializable

Serialized Fields

selected_node

javax.swing.tree.DefaultMutableTreeNode selected_node

root

TemplateThing root

Package ini.trakem2.utils

Class ini.trakem2.utils.OptionPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

bl

java.awt.GridBagLayout bl

c

java.awt.GridBagConstraints c

tl

java.awt.event.ActionListener tl

kl

java.awt.event.KeyListener kl

mwl

java.awt.event.MouseWheelListener mwl

numeric_fields

java.util.List<E> numeric_fields

checkboxes

java.util.List<E> checkboxes

choices

java.util.List<E> choices

all

java.util.List<E> all

setters

java.util.HashMap<K,V> setters

rows

int rows

Package mpicbg.trakem2.align

Class mpicbg.trakem2.align.Align.Param extends java.lang.Object implements Serializable

serialVersionUID: -2247163691721712461L

Serialized Fields

sift

mpicbg.imagefeatures.FloatArray2DSIFT.Param sift

rod

float rod
Closest/next closest neighbour distance ratio


maxEpsilon

float maxEpsilon
Maximal allowed alignment error in px


minInlierRatio

float minInlierRatio
Inlier/candidates ratio


minNumInliers

int minNumInliers
Minimal absolute number of inliers


expectedModelIndex

int expectedModelIndex

desiredModelIndex

int desiredModelIndex

correspondenceWeight

float correspondenceWeight

rejectIdentity

boolean rejectIdentity
Ignore identity transform up to a given tolerance


identityTolerance

float identityTolerance

Class mpicbg.trakem2.align.Align.ParamOptimize extends Align.Param implements Serializable

serialVersionUID: 970673723211054580L

Serialized Fields

maxIterations

int maxIterations
Maximal number of iteration allowed for the optimizer.


maxPlateauwidth

int maxPlateauwidth
Maximal number of iterations allowed to not change the parameter to be optimized.


filterOutliers

boolean filterOutliers
Filter outliers


meanFactor

float meanFactor